Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6095247 chr20:47320835 T/C 4.02E-9 501 31.53 32.07 18.22 KM Plot
THCA rs6095249 chr20:47321045 T/C 4.69E-9 502 31.53 32.1 18.22 KM Plot
THCA rs6095270 chr20:47356062 T/C 0 496 31.42 33.63 5.8 KM Plot
THCA rs6095272 chr20:47357517 A/G 0 499 31.47 33.63 5.8 KM Plot
THCA rs61011126 chr19:9814421 A/C 4.49E-6 501 31.42 33.53 32.9 KM Plot
THCA rs61014195 chr7:32780471 C/T 0.000101 498 31.47 31.7 31.97 KM Plot
THCA rs61042657 chr7:32784206 A/G 9.85E-5 498 31.45 32.3 31.97 KM Plot
THCA rs61120766 chr10:104833922 A/G 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs61206940 chr8:144565421 C/T 6.19E-7 492 31.7 30.92 21.93 KM Plot
THCA rs6122705 chr20:47234709 C/T 0 502 31.6 32.07 6.78 KM Plot
THCA rs6122709 chr20:47278938 C/A 1.11E-15 500 31.7 32.03 5.8 KM Plot
THCA rs6122720 chr20:47351095 G/A 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6125393 chr20:47222048 C/A 0 502 31.53 32.1 6.78 KM Plot
THCA rs6125399 chr20:47232796 A/G 0 502 31.6 32.07 6.78 KM Plot
THCA rs6125402 chr20:47244450 G/A 0 502 31.47 32.93 7.77 KM Plot